Scaffold B570J29644_1001404

Overview

Basic Information

• Taxon OID: 3300002303
• Scaffold ID: B570J29644_1001404
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1988
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F003422	Metagenome / Metatranscriptome	487	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29644_10014041	F000450	AGGCGG	MGXRANFGFVQPNGNTIVLYGHWAGHNMLAQLAEAVFKARPRWSDPSYATRITISQMINNDWGSETGWGLHVNEIGDNEHKIAIVDFNQQTFSLHEEAPRNDLDNKVNGMXNEAIFTMDLSNFVEKYADVTLSV*
B570J29644_10014045	F003422	N/A	NELVSXKYTFVCDPDECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIQPTETEGNKMEETSTVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVVNLEWELHNGRERQKQNSLLHSQIDSVKEIIAEAYADSQDQDTLRAIAEALQIEITKTIEFTATVEVTGTIDIDLLSEWGGDFDSEIEENLYVESQAGNIEINEQYVTNVREA*