Scaffold JGI24891J29808_1003821

Overview

Basic Information

• Taxon OID: 3300002301
• Scaffold ID: JGI24891J29808_1003821
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1798
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F019636	Metagenome / Metatranscriptome	228	Y
F070899	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24891J29808_10038211	F019636	N/A	APPEAAYPPQQYVGPFASNQERLLSQSLAVNMMTGAEIQELVRPPLPQVRLFPERFGYTDVELGIEDIINMPGRAQQRVESDFSNTPNTTESSSTNSLGTTI*
JGI24891J29808_10038212	F070899	AGGA	MKNDPGLLTDSTGEGMAGAEDVRLDTQKDLKTHYNGSKPCIECGLILNPVQSLHSDMCPNCNRRKAAHLVKGGMA*
JGI24891J29808_10038213	F003439	AGGTGG	MTVNNSRSQNESLNEGATDGKYRKRRPNTTVIPGLGDQEVVKNRAGLHPYMNYGFINSEEASKVNPGK*