Scaffold JGI24891J29808_1001176

Overview

Basic Information

• Taxon OID: 3300002301
• Scaffold ID: JGI24891J29808_1001176
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5859
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035607	Metagenome / Metatranscriptome	171	Y
F048062	Metagenome / Metatranscriptome	148	Y
F094805	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24891J29808_10011761	F048062	N/A	SARTEWCKGPGCKIEDCDGKTSKEATNGNQETLEVVDVRDLDDQAGVWDRQRVMSPDHQTNVLVPEAVNGEDAGYVPFYNDGAETGIIPQQGPHHQQLDFQDGTNPALAPYAGTVAAVQASREKIFEAMQVVERLEKLGMVQHDDRAKHIAKFEQMSNASLEGFKTALDAFEDSGARQPRSQKVASGSNRLPEMGRLTTASTVKRQDVISDDWLMTL*
JGI24891J29808_10011764	F035607	AGGAG	MAKTVSRSGDNGESTPVPVVDLGGYYEDHKPDPADLSAARVPVAPAAFTGMQDVATAGWIENLMDSSTVFTSAKGSFKLAGRGYHNSIQPIAEEIRKDPFLLRAVQRDRIAFISEEQAMEKIAGLKDESSTSASHMDHLRESLSAGASDNNGMYKIPLPDEAEPKGPSQSWEQVWGTSTSTPKSKNV*
JGI24891J29808_10011765	F094805	AGGAG	MSDSKDTQITQDAFVAAPAAAAEPLGAVIPSGTVLSGTTIYNEPWFSVWLPQTFPGTVSGGVAQPTLSGNGYGGSNNNGFVFQNDQYNTTVRGF*