Scaffold JGI24891J29808_1000996

Overview

Basic Information

• Taxon OID: 3300002301
• Scaffold ID: JGI24891J29808_1000996
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7487
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F030331	Metagenome	185	Y
F051640	Metagenome	143	Y
F080791	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24891J29808_10009963	F051640	AGGGGG	MARLVPRDGFAKEVEINRQSGKKVLRAGRDGMYRTDNPKDIAALKAEGFTEGNLALHTTGDNDRGYNCENCGFGSWFKLCSRCGHDMASPKTDGD*
JGI24891J29808_10009965	F002722	AGG	MANVGRVQLRSTLYSYLTGANIGSLNQVFTSFPKRINYQVNAQPGQMSRAAAVIFIAGERETRLAIGGATNGWKRVDFQVVLQIFHHSLQNNAEDAMSDFDTLIDNIKNTLRASHNFGDSTQVNVWQGAEPVINCIYGEPTTSDNGATETFAEIQFDVTQMIQA*
JGI24891J29808_10009966	F080791	GGA	MATYQYNGDEVREFPTLGLTVKPGDTFDSVDEIISADIALAXAPKKTTPATTPSADADTTQGA*
JGI24891J29808_10009968	F030331	AGGGGG	MSRKISLPSGATVTLKDASELKVKDRNRIMIAGDEGSQAQKGIAIGNALLAAIIEDWSLDLLIPSVKIDSIEELSIPDYTALMKETDTLTKELFPDISDSVENASDPKATTENSNA*