Scaffold JGI24891J29808

Basic Information
Taxon OID	3300002301 Open in IMG/M
Scaffold ID	JGI24891J29808_1000673 Open in IMG/M
Source Dataset Name	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002301 Open in IMG/M

Scaffold ID

JGI24891J29808_1000673 Open in IMG/M

Source Dataset Name

Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13715
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (78.95%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13715

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (78.95%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Brandenburg, Germany
Coordinates	Lat. (^o)	53.1666	Long. (^o)	13.0333	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Brandenburg, Germany

Coordinates

Lat. (^o)

53.1666

Long. (^o)

13.0333

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F027396	Metagenome	194	Y
F037031	Metagenome / Metatranscriptome	168	Y
F052345	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24891J29808_100067311	F052345	GAGG	MDRRTREYKELIKMTPTTEDLLSEEIDGELFLYKTSPHCKVCNTSDDLKNIIDSLLLFPKSYKEVLRAIQPLQDKLDLAPEERINYENIRLHQKNHLPFEKRVVREVVERRAREKNISILNASDRMLTAEAFYEVIVAKGWEDLVSGYNRPTLTQTMHAMEMISKLEEEKTDTYRPEDLINQLDIILTAIRDILPTDMKEALFRRIEEYQSGIETKKKSLKSAVAEEEEGYIDDIPFEDEL*
JGI24891J29808_100067313	F027396	AGG	MTESAPRKSRKQEVIRGKMTWQILERLLNNYQEWYEVYLTTGNPELQLLNGVTVNIYDVLKGIDRLPPRQKQAVVLSCLENRKEVEVARIMGFTKWSSQVGMYKRKALKTLCETVWKMEVD*
JGI24891J29808_100067314	F021233	N/A	MSTNKPLRRGLEGMPEPELGPSHDDKFGDLHDFVVRAFTWKTKPEDLDMLTSIDRVVDDFLKEYVHPAEVIIARFNTDKNISPDEADRLFLNLQSAIVAIEEEVTRHYLKAQFSWYKLDDKYWEAWRKPTNGTQKDLEAVAKAETKEDRYFYFVQYAAWRIISDKVASLKVTQRYIQNQIYRRG*
JGI24891J29808_10006737	F037031	N/A	MSNTNELQGIRPEDVKHTPAQQAQIDAYLAQQKAEEAAMGKEEPIELMESEIMAVWEILRDLQTKYGHRQGSFNNLISLKHEADERFEKIGLQVVVDWVMPSISVKPTPPTITIVGRLAGHEYNPEQNRYEVGHGVADDYYNMKRAQQKTKSKLILPGQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24891J29808_1000673

Overview

Ecosystem & Geography

Associated Families

Sequences