Scaffold JGI24891J29808_1000167

Overview

Basic Information

• Taxon OID: 3300002301
• Scaffold ID: JGI24891J29808_1000167
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79324
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (85.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021910	Metagenome	216	Y
F024029	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24891J29808_100016755	F024029	AGGAG	MSEYIWTAAGTNIEERWIKQYGWVKPSELPEYQAKFKYFQELPLRKLDDQAKIEYEMVLKKAKVVRIK*
JGI24891J29808_100016765	F021910	GGAG	MSMHDRWYEPDDYDDRSDEIEERTWQLMKVGAMFDYKTSGAIAESLSEMGVQDSEDLQAVIDSGDYEALGRKLISMACEYMEFHAKSVAEREIID*