Scaffold B570J29590_103325

Overview

Basic Information

• Taxon OID: 3300002278
• Scaffold ID: B570J29590_103325
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1073
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041188	Metagenome / Metatranscriptome	160	N
F060594	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
B570J29590_1033251	F060594	N/A	MSTILRLPPYPLTVRYTVPDANAKYVIVIEDVAEQSEVASYRTSNASKQVSYVLDDDFIKYDKSYALTIYEDLEESGMVLADRGDIVVEDNLEVKRPYVDPTLLAAANNQTSATEIAKYTEYENLARAIIDSITGGFYYEREFFEIVGQEVDYIPLWKKVHKILRVYENTELVYDIYNPDGPTVGDYTYVITKDKTALTKDPTSAEGAVNRAEQRPARMPLG
B570J29590_1033252	F041188	GGAG	MNLTMDQLKDKTVMALKAYAKKNNIELFESNTKLEILEILASWIPPEITEETAEKAGKNKDLTNKVALHSDRNLHMDGLGALSVGYNIVSKEASEKWLTHRLVRIAQPEEVASYYAKV*