NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ26739_100503904

Scaffold JGIcombinedJ26739_100503904


Overview

Basic Information
Taxon OID3300002245 Open in IMG/M
Scaffold IDJGIcombinedJ26739_100503904 Open in IMG/M
Source Dataset NameJack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1088
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002396Metagenome / Metatranscriptome564Y
F066496Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ26739_1005039041F002396N/ADRADVLMSAGCSTFVSAALILVIPRVGIVLLEILLGLFFIGCALAARARLRIQARSQVKEGPEGSTNAKAKWFDRYDVLMILTVIVIYSSVSRLLRGAGLSDGTVGILPLILFAAGILLKPRAVQFIERRRKDRTAKTHDGRSHVHADEKQEIARKETVERCQ*
JGIcombinedJ26739_1005039043F066496AGGAGMSEKNQIVVVLIVALFLGALIDRSTALKIVAGVVLLWTLQ
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