Scaffold KVRMV2

Basic Information
Taxon OID	3300002231 Open in IMG/M
Scaffold ID	KVRMV2_100037448 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Santorini caldera mats, Greece - red mat
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002231 Open in IMG/M

Scaffold ID

KVRMV2_100037448 Open in IMG/M

Source Dataset Name

Marine sediment microbial communities from Santorini caldera mats, Greece - red mat

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24291
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (57.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

24291

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (57.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location
Location Name	Santorini caldera, Greece
Coordinates	Lat. (^o)	36.5	Long. (^o)	25.45	Alt. (m)	Depth (m)	336
Location on Map

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Source Dataset Sampling Location

Location Name

Santorini caldera, Greece

Coordinates

Lat. (^o)

36.5

Long. (^o)

25.45

Alt. (m)

Depth (m)

336

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F011190	Metagenome / Metatranscriptome	294	Y
F036977	Metagenome / Metatranscriptome	169	Y
F106115	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
KVRMV2_1000374481	F011190	N/A	MSIISNFINGLRKSFSGKDYLRDIHQCNSCGRPSFFDSCLKCETDQAYRGWNK
KVRMV2_10003744835	F036977	GGTGG	MSFDLTKQRLQSAKNRIDNHIDQNIVLWATETVLLPGQTDIANSISQRAADGLSLEKSGYMKVDLVWDFRSEEGAPIHFFLEYGTRPHEIRAKGKENGGADALHWTGPSGESRYAKVVQHPGTQARELISQIKEERTPDLKQRIIDETQRFMEINSI*
KVRMV2_10003744837	F106115	AGCAG	MAVATAATIQAHLLGGTYPEGTLNANNIFDYEQYTTRRRYPSCEVITTQPESTVETKKSTDTTIAFEINYYDKNLGLRTDDVSTQREVENAIRARMETMVLQDYKIVLESKTWSRQSVQRDGSHPAYLVSTLKITVRQVNVTVMPVDGVLKFIDNGSTVPDNQPTQDYTYTNVFDVDLQSGYRDIEEGYTGSNIPRHFAGHIQGRFICNIMVKSTDLGTTGEKLNKMPLLKNNGEKPEIKFVYTNKTADEQTITNTFTAEPESVQMMYKTTDGVVFRLIARLITDIIVT*
KVRMV2_10003744839	F006550	N/A	MAKVFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEAGGYAIYDFNKHFTNQKLAKDNFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSNFEANKYGLKFVIHEEARXKNVHXVLQDSIQVASNKVEQRQSFDVIGLADGSLTAKAAAGAWDTFTANTDHSDNSPLLDLGVAQLLIEGSGVGGKLSRIGMHPLDFAKYMSNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLAALIQSETGRQLTGCTTPTNWT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold KVRMV2_100037448

Overview

Ecosystem & Geography

Associated Families

Sequences