Scaffold KVRMV2_100000490

Overview

Basic Information

• Taxon OID: 3300002231
• Scaffold ID: KVRMV2_100000490
• Source Dataset Name: Marine sediment microbial communities from Santorini caldera mats, Greece - red mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64189
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (51.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location

• Location Name: Santorini caldera, Greece
• Coordinates
  • Lat. (^o): 36.5
  • Long. (^o): 25.45
  • Depth (m): 336

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F001235	Metagenome / Metatranscriptome	741	Y
F001625	Metagenome / Metatranscriptome	661	Y
F031648	Metagenome	182	Y
F049929	Metagenome / Metatranscriptome	146	Y
F062151	Metagenome / Metatranscriptome	131	Y
F064801	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
KVRMV2_100000490102	F049929	N/A	MTTKSFEIDWINGKETIEYDDDITYGELEAILQSAIDLSDVSKPKVNIPKYRFSILMKVLTKAPFPTGDAVSIRNLKSKQANQIMKEVMKDYPLAKYLGEWVESFTGSLDPNEQDSEFTMSAP*
KVRMV2_100000490104	F062151	AGGAG	MGTANYDVVNTIITILTDNWTAGQAPNIQKAWEKRTVGFIDDRRDQIIITPKAEDVKYFSLFGTDHFHDVTVDFDIRTYQNDDRHNNVVKETMKILKDKIRGGNDYVDLRIIASYTRNQYMRNMFNHIVTVSMRKMNPV*
KVRMV2_100000490108	F031648	N/A	MVEYNHNVVSFNSDTTIKGAHGVIVSVYVSKTGSSGSKCIFKNGTSASGTAEFTIFSENQGTYVGINRRFEDGIFADITGTAEYTVVFK*
KVRMV2_100000490109	F001625	N/A	MAVTVSTSDWTAANVRKTLSWQAALTSKLRIYKVKVTAGGSDAYATNGVAADLTESRISTLVAVIPEFTDSLYKVEYDKANSKIKLYSVGGSAGATFAEVANSTSIANKVFEFLVIGY*
KVRMV2_1000004907	F001235	N/A	LATKLNVDTGGEYVGKKLWENHQANEYTRVNNYKEGVCLNCLKVDAVAATIVTICGECAGKRGREPLLAKVSDKMYGLCYFCSEHKFHIEEINGRFCHPCHRRIADVTKEYNKKGGLYGNPFWARMKKKNGKDWKHIFNQNLGNRR*
KVRMV2_10000049083	F001066	AGGTGG	MADGLFKIKAIDGKNVVSTDKRKIISPYNSTKHFKDANIPAYCDQCIYRSVDTGGNGKCPKYEKGAICSIRDDFVKIINQIDTRNPDDIKSMLDMIAKISFENVLMALTQAXMDGNIPDRNTKSEINTLLAIVKSINDLNTKIVITEKSETNDKTGDITSIFKQIKAQRSGD*
KVRMV2_1000004909	F064801	N/A	MGFKDTLSAFASRFSNKSYTEGTTRPSVATPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVVEKWKFKCENCGKEFQYKPIKGDHKDEQPFEQNADNESQSLPRNDAKKAIAHELNESEEMECDTCGSDKMLRPIPENRKKLENLLVNPINGNEQTLEDLTRQLERDLEIADNAYCLILKNYKIDDRTGKIDHQASEVKELLRIDPPQVALIADSDGRIGYDDKRNKVFVCPRFEHRDRRLNVPKCDRCGAEALKAVIEVNSVYSIGIPQPKRVVYGEGEVIWKAGKYKPSLLYGYSPIYSIWSKAMSLSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDVLEQKATEDPYMIHPLLVESDKGGKNMAQWIDFTGSLKELEFTEIRREIRMIIGAVFGVLPLYFGELPSGWSQEGLQVTITNRAIKWGQDILQQAFLRKFAKLLDVDDWELRLKGGEENDKLRDLQIQGVEIQNMAAMQGMGFEVTRTHTGEFKVSKNPIINPTMMMLESNNEDDKKPNTSGSKGRGRGTAAPKEDQQEIDGKPKKQRPSDKGGIGQGSPSSGKGTSLSKKSDMQAFLEPKKFPDGINSANFEIVKTTLQSAIDFDWTKKKTVNELRNKAQMTVRQAREIVKQELADTKRWEEEEF*