Scaffold M1t6FKB2_1642420

Overview

Basic Information

• Taxon OID: 3300002226
• Scaffold ID: M1t6FKB2_1642420
• Source Dataset Name: Marine microbial communities from the Baltic Sea - M1t6 FKB2 (106N)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Karolinska Institutet
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1670
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.133
  • Long. (^o): 10.0
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y

Sequences

Protein ID	Family	RBS	Sequence
M1t6FKB2_16424201	F004866	GAG	MAIVNKVDLKHQVDINVSIKYQIVTYCFFNDTLISNSDLKFLTELAKEKGIELTKFCNKTVNEDIFKSAQSARNAITKAEKKGLLVKTGHNKKTIKLNPDINVQSNGLVLLDYKILGRESEKS*
M1t6FKB2_16424203	F005243	N/A	VFINFKKHMMTDFKTNENLQDKDPKMSKEEMAARRDEITTFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMFMAQQYAAQKGEGTPDPESPEGKAFQDAMAKAMTNETA*