Scaffold SCADCLC_10031991

Overview

Basic Information

• Taxon OID: 3300002219
• Scaffold ID: SCADCLC_10031991
• Source Dataset Name: Tailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC:
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2394
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005744	Metagenome / Metatranscriptome	391	Y
F042353	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
SCADCLC_100319914	F042353	GAGG	METRTPPTTLTGDACRRLERIIRDDLEHATVSSAMVLVEESGRITINELVLRLEDGRMVTLMPLGVPAETAVDLRLDIYDDHLPGGHGWREATVAEDYTEELDELTAAPWHPEPDTAEEARL*
SCADCLC_100319915	F005744	AGG	MDEMFEIIKAGAPDAPPEQALYRIQQTYPDGSGGRLNIDWTGLHRLHDLIHDRIAMEGCVCETCSTRGCHRPATWEIECRGAGVSGRLIYSCDEHCPDPAILSPQDEIRRLVEV*