Scaffold SCADCLC_10031659

Overview

Basic Information

• Taxon OID: 3300002219
• Scaffold ID: SCADCLC_10031659
• Source Dataset Name: Tailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC:
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2143
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064746	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
SCADCLC_100316593	F064746	GGAG	MNKIIWMALILLLGVFAIGGMSGTSGNDDAKNVTIDGYTFEGDFDDKWISGYGDTKTYKPANLEDEFGIPIGAYDWTGTENYNAFYYDSGEPSGSITKYGWAHIFVLKPDEDMANVLKSATRLLINPRNHRNAVVTGDLTEKEIEYNGRQAYLVEIKEELMDGFVDYRDYAAIAFFLDDGKVCVIDAFTTDNFGMSAWDIIDSIEL*