Scaffold metazooDRAFT_1276219

Overview

Basic Information

• Taxon OID: 3300002202
• Scaffold ID: metazooDRAFT_1276219
• Source Dataset Name: Freshwater microbial communities from San Paulo Zoo lake, Brazil - SEP 2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1448
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location

• Location Name: Sao Paulo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010835	Metagenome / Metatranscriptome	298	N
F023575	Metagenome / Metatranscriptome	209	Y
F049589	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
metazooDRAFT_12762191	F023575	N/A	MANSKGLALVYGAKGTITLFTPAGAALTTGAITTIESYDATHEADVEQIKNGAGEVVAQVSANERISLSVTFIPSASTFAQAKLAAGLPAVNGYATITSSDDIDLGVFTAGQAINSIDGNYVYSGGGSVKFTSSG
metazooDRAFT_12762192	F010835	GGAG	MNAVALRTERALVDWLAAQDWSASPLGTPACLTSYGHGAFADSDLEDRMPDFPRIVVRASTAVPVHPLDRTCELDVSAVLQLSADDTAEYQLLAVVQVFENLLQYLCVDGNISELNTDDTDPSGGYNAQFAVPVDFGINDTSERARTFTRSMTIFAAANAI*
metazooDRAFT_12762193	F049589	N/A	GRSRELRVVHLIAQAKNKKAGKEGLYGEKMREAAASLRRRAAGSVGYLKSCVVKGIKKLSPSFTQFGGTRRARKGSAGVRSIAANQALLNLANQYGLPSENVSVHRGSSAYSYNAKAGISPHSHVRMNIGLADNQIGKVNSIYAKAMQQAYDDEAKELEIHIRAKMEEAAEVLEKHGVTVT*