Scaffold metazooDRAFT_1257108

Overview

Basic Information

• Taxon OID: 3300002202
• Scaffold ID: metazooDRAFT_1257108
• Source Dataset Name: Freshwater microbial communities from San Paulo Zoo lake, Brazil - SEP 2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 655
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location

• Location Name: Sao Paulo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004638	Metagenome / Metatranscriptome	429	Y
F007222	Metagenome / Metatranscriptome	355	Y

Sequences

Protein ID	Family	RBS	Sequence
metazooDRAFT_12571081	F007222	GGAG	MADKKGRGIYTIDVDPYEFKNLLGLLGSFPAEYQQLVRDRAQPMSQRLAGQLMMSGLSAPAPQTKLVVQTIKSPRDRLIRVDIGGPKKVGRKYGGETSKSGKGAKVRQNAAPAGALLWGTEYGSHTGVDSLGRVYTNRFKASYNKRGYWIAPAVDYYVPVVAREYALMVQQ
metazooDRAFT_12571082	F004638	N/A	EAVSPKSWAVGSLNRILIEVAIATSIPMSEWKTEEDLLTAIEILERQNGR*