Scaffold metazooDRAFT_1246441

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold metazooDRAFT_1246441

Scaffold metazooDRAFT_1246441

Overview

Basic Information
Taxon OID	3300002198 Open in IMG/M
Scaffold ID	metazooDRAFT_1246441 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from San Paulo Zoo lake, Brazil - JUL 2013
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1600
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location
Location Name	Sao Paulo, Brazil
Coordinates	Lat. (^o)	-23.651072	Long. (^o)	-46.620675	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029410	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
metazooDRAFT_12464412	F029410	AGG	MHPVYFNDVAIPFDPAWRHIAISVSGGADSALLAYFLCNLANGTGATVHIINHIRCWKTKPWQQYDALKVYNWLLNRFPAVKFERHVNFIAPELEYGSDGPTLIDEYGKKVSGDNIQQRAYAEYIGAAYNIDAYYNAVTRNPRDVNLKGMSERDIDRDSENAHLEIMKHMGRWALHPFRFVEKSWVIKQYRDHGIADLFDLTRSCEGVFSEIDYTNYLNGQEVPTCGECFWCKERAWAIEQSK*

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