Scaffold LCLV3ORF_1005617

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LCLV3ORF_1005617

Scaffold LCLV3ORF_1005617

Overview

Basic Information
Taxon OID	3300002191 Open in IMG/M
Scaffold ID	LCLV3ORF_1005617 Open in IMG/M
Source Dataset Name	LCL_V3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1539
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location
Location Name	Red Sea
Coordinates	Lat. (^o)	21.34383	Long. (^o)	38.07683	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014809	Metagenome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
LCLV3ORF_10056172	F014809	AGGAG	MATSITRTFDATPTDKTYFSLTDNMSSSNLGNIQVPDGTSRIARVDCAFDCPDTKGSVVVCRLSGSNMSEQNFTIYGQSGDTADAAAVTAHNEVAVNFPVSNVNNIDLQIAIQYTTGTATASSGAVTLYFE*

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