Scaffold JGI24539J26755_10039469

Overview

Basic Information

• Taxon OID: 3300002186
• Scaffold ID: JGI24539J26755_10039469
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Norwegian Sea - 10m ARK-5M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1498
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Norwegian Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 71.2008
  • Long. (^o): 8.8666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012511	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24539J26755_100394692	F012511	N/A	MGIADKKYSNVDKKTAEILVEAKLLLEEEGYEVSKPREKSIARELMNVAYGKAFKTMSKDPDLTVRKICLKAIEDKFFDTCLDTLIKGPKKRAAFDNKSPKTWTEKTVTQDIKTKGHFKRFKLIEQYIKIDMSATRALLDPDYRPHSNKVAIKKIK*