Scaffold JGI24539J26755_10000072

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24539J26755_10000072

Scaffold JGI24539J26755_10000072

Overview

Basic Information
Taxon OID	3300002186 Open in IMG/M
Scaffold ID	JGI24539J26755_10000072 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from the Norwegian Sea - 10m ARK-5M Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	41316
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (15.79%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Norwegian Sea, Atlantic Ocean
Coordinates	Lat. (^o)	71.2008	Long. (^o)	8.8666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24539J26755_1000007212	F002045	N/A	MEFFCVYVKTRKKIDKYLKVNSIKNKYIIDLRKIQSEEDLDIKKDKTYLKILIFNKIRQAIEKKKDIYYIPDFDNDFSIEKLLNLKKILGDNNFNVLVFYNEFRKNNELVDDVMENLSKFSNSQIIRDY*

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