Scaffold JGI24816J26688_1080572

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24816J26688_1080572

Scaffold JGI24816J26688_1080572

Overview

Basic Information
Taxon OID	3300002177 Open in IMG/M
Scaffold ID	JGI24816J26688_1080572 Open in IMG/M
Source Dataset Name	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	547
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	8.0	Long. (^o)	-156.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010693	Metagenome	300	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24816J26688_10805722	F010693	AGGCGG	MIAVLVFGLIVLSVICLWLLIEGRKSPKFLIWFIPLLLILVASTYETYTSILGFPRITTPKKGLYLKHYIDEPNWIYLWILGKGNIPMSYQIVYSREKHNSLEGVKGKSDEGKFMVLGEAVSDVDGGDGADEDGDTGG

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