Scaffold JGI24820J26691_1000014

Overview

Basic Information

• Taxon OID: 3300002176
• Scaffold ID: JGI24820J26691_1000014
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37019
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (88.68%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 0.0
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F052547	Metagenome / Metatranscriptome	142	N
F077304	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24820J26691_100001445	F077304	GAGG	LTNFDFTKVLLEKKRPNLGEIELTLFENCHLNCAFCHHDKKSTVGLSREGMFSKIPLVEDHLKKMQGMVDTCQINMVGGELFQDRISEWAYDIYYDMLIEIKKLYDKYEQRIKVVWVTSFQFSKRDRVQKLLDDLNEAEIPSYIICSYDFDGRPVKGPYGKNIEYFADYITSINMVATVPSIERYMADDDEYFHYLYDKFDNFYFDDYIPDKGFDHLIPSDSRYLDFLTFTFHNYPDINPIADLIRNXNNHMHCMALNKVTIFPNNSISNCRWNRYTESDFNTPLNRQDNASMMQSYMDEHGCLSCKWWNKCGFRCYTQWDWKNRERDLPDCVMRMWFNYMDRIKSGNTQLVSA*
JGI24820J26691_100001446	F052547	GAGG	MGIVTDNKSHAQADKDFDLSFSEGHEIKVQFNCEILSGCEFKCKGCFVNKLGNNIGDFQRLNDAIDLFNGNGYRVSTINIGPTDLFGNNNIIELLQNETFRECLSKVTTIQFVTTLPEDVDLRIIDLLNSIPKTKGFLYDCNIQLQPPVNWAKIKDRMNVLNLLSDDLNYYFVYNMGNDDDENQKVLDISRVTDKVFDSILQLNPSFFRAPKTKVQTHMIEKWKSYDFSHELYPKTIADQAQGGSLELNYTYCNERFFWTPFVYDIVLIGTEEFEVKEEWDVNSWTKVKEDQFMSQLEYAMQTEECGMCPKQMTCIDKGVISYMKHHALTSCVFPDLIRSM*
JGI24820J26691_100001448	F042906	N/A	MPLIKNNLYYELTTETQTKPVSAVKIQMDVLDGCHHKCPGCFVHRRGNASSIDQLAHAKKFVKSITDQGILVDEILIGPTDFLASENFYEVMPELEDMINDNSPILAFVSTLIDGDIVQFCDWITERINLDTEIEIGIATNPHKFSEKNYLQNIKDKLYYIDKNLEHEVTYTFVVNIRDYGLDYTALHXKTVKEFXTILDFIPSVSRSHKPNIILNTLTKFNEYFNDISKDTKLNNIMVDHSHAGMNYTVLNYKRGDWFLSPFMYENMAIYDDSLKVQSFDDVVPITETQINKAKGTECEHCPLFFSCYNRKIILLRDYLGVKHCIAPKENMLNNIHNYNAPAQTMYKWDGYSVENDKKGYRKKFLVTKDNDPELERIKSISYVK*
JGI24820J26691_100001449	F042905	GAGG	MIVKLNDTYAGYYTYDPNYSPSNIDFLRTEINLDILHGCAQMCPGCFIPRKNLTNPDHLKDLYDILVKGQYHPDEIVIGPTDIFDAQNFEEIMNHEYMFKLYEISAIGFTSTLLQPYWLIEEKLQKIWSLYRHIKRVPDIDFKIVLDVDKYLDGELDEWFDKLKLFKEGSVQFRVNYYKGVFDRISYNDLCQKAYDEFNAPVVITPSFLTDRNARGKVEQHLANFRKDLVDQKIDKKWRDYYTFFDAKFNGLGCQNYSFYNGKLYVNPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEYMMSCAERNVHMYMESRGLENCVAMKEYMHSNPVTDYAPH*
JGI24820J26691_100001452	F040106	GGA	MTMQKSYCKQMRYSGPESLAPSDAYKFDVLIQMEVLAGCDHGCLGCFVDKNIDPNMNQMIIDRAKELADGVKRTGLNLREFVIGPTDFFTAENTESVLNNSVVQEIMREHTGARIAAPAKFDKVSMEKLRHIFSILDDEDKYRREMIIEFIMPIGRIKEMLDDNEYYEEVMRKVDFFKNGTPKQMDWSWTLQASNVVGKQIDKDIYNRIIERSVNDYETIVEMNPAFSRARNQFVKRKNLFAWNDFLGRVIDENNANETVMSMANLYCNSINFVGLTVIPGEEGPTTHLNVMLHEQAFFLENKNLDVTGLSFEQILQRKNELIAKGINKSSKVKDCQDCQFAIACANRLVFEAQESLNVKGCVMNKDVLDLYNPYDFTWNDDAERLMA*