Basic Information | |
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Taxon OID | 3300002175 Open in IMG/M |
Scaffold ID | JGI20166J26741_11739595 Open in IMG/M |
Source Dataset Name | Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1044 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Kakamega Forest, Kenya | |||||||
Coordinates | Lat. (o) | 0.2917 | Long. (o) | 34.856 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000018 | Metagenome | 6467 | Y |
F000032 | Metagenome | 4750 | Y |
F106061 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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JGI20166J26741_117395951 | F000032 | N/A | RRMEKISWTDHVRNEEVLLRINEQRNILHEIRKWKANWIGHILHRNCLLNK* |
JGI20166J26741_117395952 | F000018 | N/A | VIEGKIKGEMEVARRRKKLLDDRKDRRGYSHLKEEALDRTIWRHRFGGGFGPVVRILNE* |
JGI20166J26741_117395954 | F106061 | AGCAG | VLARRIGGMGTCAEIRVTKVGREVARLAKDESGLMPEPSDVSVETRKGLQIYGCMAIVICMYFVGMYVDYL* |
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