Scaffold JGI24766J26685_10008256

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10008256
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2855
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001345	Metagenome / Metatranscriptome	718	N
F005845	Metagenome / Metatranscriptome	388	Y
F009318	Metagenome / Metatranscriptome	319	Y
F046907	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_100082563	F009318	N/A	MHRILLLLLLTACTNNRPWKVIEVRTKGNACEYVLSRSNGFGPQVKIKTDTCGKYTLFQTVNAK*
JGI24766J26685_100082566	F005845	N/A	MKXTPTDFRRWXXHIRKECVSCSRPDRSETIKAWSVNWTLLGRILQAKNA*
JGI24766J26685_100082567	F046907	N/A	MTMRWIRTQDQMPKDGVEVLITDVEGMQIVAHYSLHADLWFSENHSWWTSEVNYWMPIPEIV*
JGI24766J26685_100082569	F001345	N/A	MASAETVILDLYRTGEIRKACLTITGGDPLWRDLEQECVLILLEKDPAKILQIHGQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEELDPDSPIPQAEYDSLMDDLWAIAEAEMDTWAKDGAFPYDKELLRLHLRTGNMKKLSRDTGIPYRSIIYSIDQAKAKIKAAIQSHGHADI