Scaffold JGI24766J26685_10001627

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10001627
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6651
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023350	Metagenome / Metatranscriptome	210	N
F041777	Metagenome	159	Y
F071250	Metagenome	122	N
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_1000162710	F071250	N/A	MKKLVSLEKRVEKLLKKYKTLRNNNKALCVKVWEQQFDERKDITSNFFAMYESGKYVSADNITRIARLVKERNPELRGTNHEENKKKAQLIKPLLKR*
JGI24766J26685_1000162713	F091602	N/A	MKSDLRFCPNCDKELLAERVDFVLQDQQLEDWDSAYELIDDEGEIVTCPDCDEWDYADDDAKGEGWE*
JGI24766J26685_100016272	F023350	N/A	LTLENYIEGHYKKFKELAYNIARKEPFYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKDYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYILEDFTYRALSKETGIPMPFLYRTIDSIKQKIRANVIRKTQ*
JGI24766J26685_100016275	F041777	N/A	MKKTLLFIAMLFAGMLIAGTIDEQTRQLEQQPNHTTK*