Scaffold JGI24538J26636_10011241

Overview

Basic Information

• Taxon OID: 3300002154
• Scaffold ID: JGI24538J26636_10011241
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the South Atlantic Ocean - 30m ANT-15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2225
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): 78.8697
  • Long. (^o): 8.1122

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086182	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24538J26636_100112414	F086182	N/A	MNGQIKKNSFELHTRPISLLQGIITLGAEVQVGEDVSILFDGGAGASLLDNVGGGSEIGLTTFMVGARKYFTSTSTATRRELLKKAPLRPLEGLYVTARHRSRFYSDGDYGANTNVMIGKKVMIDQLSIAGEVGVGRQSL