Scaffold JGI24540J26637_10047120

Overview

Basic Information

• Taxon OID: 3300002153
• Scaffold ID: JGI24540J26637_10047120
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Norwegian Sea - 20m ARK-7M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1436
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Norwegian Sea, Atlantic Ocean
• Coordinates
  • Lat. (^o): 73.0188
  • Long. (^o): 9.8566

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033051	Metagenome / Metatranscriptome	178	Y
F056079	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24540J26637_100471202	F056079	N/A	MKELSDFINRMRADHKAHLIVGVVTGFPMVLLFGNIGGLIALATYALKELVHDKILRRGKMEFMDWLYSSIPTLQLLIIYNL*
JGI24540J26637_100471203	F033051	N/A	MIYVLKIIAALLPSFIQELIPILKSKERSIEHLKSHDIFTTLIRVRNEVANLKFYSKGEYDRVKTKMCNDFTKHKITKCSERIGNLLKIRGLSSMSRDELKTLILEEQXNMHTDYVRSVSAEWEMKGXKPEDVDHVIHLFEKFRYDVLVSFEHRVNSIFGSSYNKDNFSLMLAVLEMWAMGIDLLPRDMHTTFESLNGKFKELEILM*