Scaffold S2t7BSb_11098053

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold S2t7BSb_11098053

Scaffold S2t7BSb_11098053

Overview

Basic Information
Taxon OID	3300002145 Open in IMG/M
Scaffold ID	S2t7BSb_11098053 Open in IMG/M
Source Dataset Name	S2t7BSb (114f)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2843
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)	57.305	Long. (^o)	20.0745	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F020144	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
S2t7BSb_110980531	F001881	N/A	MSKAQDFMNAVWECRNNGADTEEKLVAAILMIAAENVISYTAQNDLIVLDKNDMLEIANELNQ*
S2t7BSb_110980539	F020144	GAGG	MNSNDFKPYTLIPGTQVLRSKIDVFTMSDPTDEDHFYRVELTVDNDGVFITSCEKTVREDISIGHKDVAIALARAILEAYGEV*

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