NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M2t2BS2_10732458

Scaffold M2t2BS2_10732458


Overview

Basic Information
Taxon OID3300002144 Open in IMG/M
Scaffold IDM2t2BS2_10732458 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15659
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001913Metagenome / Metatranscriptome618Y
F006002Metagenome / Metatranscriptome384Y

Sequences

Protein IDFamilyRBSSequence
M2t2BS2_1073245818F001913N/AMIKEVLFLLKETDCKSEIVQLAKGKNKFPDSFKEVFTRQKQELKWKK*
M2t2BS2_1073245822F006002N/AMRAVYCKCLNTYSIECKQNEVKGCDAPDYWKQGIGSIYKVDEE*

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