Scaffold M2t2BS2_10526365

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold M2t2BS2_10526365

Scaffold M2t2BS2_10526365

Overview

Basic Information
Taxon OID	3300002144 Open in IMG/M
Scaffold ID	M2t2BS2_10526365 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8334
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	57.305	Long. (^o)	20.0745	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010604	Metagenome / Metatranscriptome	301	N
F054676	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
M2t2BS2_1052636510	F054676	AGG	MAITIQDQPTTTYISPAFAPIEYLLSSSNSTESGFKIVCKVYLNPSGANTLISTQQISVRPLTTQAILSIQDVVKSFVPISYSVTGGDTVGLINETLNEFKVTFQEYYDSALQGSVVVSNIISAYAASPKYIQFASNEWQDYQLATSYIERNLLSNFSNTIPVINAFSGANNWLKVKTTQKTQIQWAQSGASANFKVWLKTLNASFTQISLSQLDLGTTSKGYFALDIGRQEASAHAWDTPIVWTAAKYYAVAIYDESTTELVSNAYLYELDDCDTNYTPFELHWLNRWGGFDSFVFDGKSNQTTEVNKTFAKYSPDRVSGTSLNYSTSAQRMRAFNTSTSESYSLNSRLLQDFESVGLEDLVSSPEVYWRSEAGFVNVNVSGRTYQHAKSENGLVYSLALDMTIDNSDERQW*
M2t2BS2_105263658	F010604	AGG	MERTELYKMSVGQYQLLNEIDGELPIMEQNIYAVAAIQDITYEEASKVKLKDFAVMIAELGEFNIRQLEKLKINSKVIINGIVYHVEHKPDKLTSGQLLDIINIRSKYQGEGVKVMDLLLAAISRPEDKNYGDDNLTLNERAALIRSTELDKVWNIFVFFWNLWNDYLDNTEDSLTKWMTETLAMTREILDKDGDSSA*

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