Scaffold JGI24808J26613_1000735

Overview

Basic Information

• Taxon OID: 3300002099
• Scaffold ID: JGI24808J26613_1000735
• Source Dataset Name: Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10906
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location

• Location Name: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.214
  • Long. (^o): -96.5852
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023978	Metagenome	208	Y
F049056	Metagenome / Metatranscriptome	147	Y
F083332	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24808J26613_10007355	F083332	N/A	MSEIDFNKLIKDIIGVARGEATANSNSVSPLERNNKLSITLKLEVTISKNSTQVYKDNQKSSRKLVLLTINEHE*
JGI24808J26613_10007358	F049056	N/A	MKKNVIFMLVAFVTLNLSARTPAGGSDPVAAVFAKGPTGEKVPASIEAKFKKQYGSVIAVSWKVIDDISVATFNEQGVERDVYYYNDGETYGFGKLVDKDVLPKVVKESFTERFRNGVLQAVYEFKTLNSPTRYYARVVAPNYFAIASATEFGDMTLYQKEKIK*
JGI24808J26613_10007359	F023978	N/A	MKKNVIFLLSAFLSLGLFVKAAVHKIPNPVFPVFAKTLKGEKVSPLIEAKFKKQYGNLVNVSWSVVDDLSDVHITIATFTENAEEKEVYYYDDGEILGIGKNIRRELLPENVVKSINSRFNGGIIQTAYEFKERSSATKYFVRVITPKHTMLVSANEFGETKIYQKEKTKRFFE*