Scaffold JGI24808J26613_1000326

Overview

Basic Information

• Taxon OID: 3300002099
• Scaffold ID: JGI24808J26613_1000326
• Source Dataset Name: Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15493
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location

• Location Name: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.214
  • Long. (^o): -96.5852
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049664	Metagenome / Metatranscriptome	146	Y
F050408	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24808J26613_100032611	F050408	N/A	MGLFMSMKINEPPLIENIIYSHIPCYFYKLKLTAMRSFVILIILLTVVTACKQKVISGAELEKKLIKTMQDHLEETGKKDAVYKVQDVTFYADKERKLYICEFHVNVKASDVNVDTTGIMRADIPNDFSKVMRKQ*
JGI24808J26613_10003265	F049664	N/A	MLFAFYSGKKIMNRKRIIAGISLLAVAGIILYLRRRHRANVVDEFKAEQVSEHGYETAHDILFPKKSKRIKRHRYNEGLR*