Scaffold JGI24218J26658_1002061

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24218J26658_1002061

Scaffold JGI24218J26658_1002061

Overview

Basic Information
Taxon OID	3300002092 Open in IMG/M
Scaffold ID	JGI24218J26658_1002061 Open in IMG/M
Source Dataset Name	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5471
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Brandenburg, Germany
Coordinates	Lat. (^o)	53.152741	Long. (^o)	13.022518	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040440	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24218J26658_100206110	F040440	AGGAG	MASNSNYPDKPGYGTLFFVAPEDKKHPQGPDFTGHLVLDMDYKAGERLNFGLWSKQTKMGTTMFSAREDNWLKKKKLEDQQPREVTPGYAKPKKASYGRDENEIPF*

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