NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24218J26658_1000434

Scaffold JGI24218J26658_1000434


Overview

Basic Information
Taxon OID3300002092 Open in IMG/M
Scaffold IDJGI24218J26658_1000434 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21237
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.152741Long. (o)13.022518Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F007405Metagenome351Y
F027746Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
JGI24218J26658_100043410F000934GAGGMSLTTILSISETVGINDQRFIGQSISRNQKISTAEILTVVPFLFDLKPMNYLLYSQNRGLLNSLRIPDKSLEQYLNFSSTGWANYVAYQGDLSSSDIATAQWQTSSALKTLVLGNFAGGISSSDYVVKIGDFCQVGRYSYIATADVLRGSASTVNIPVHRTLLTPVVSPINAVIGQYGTTVAMGGNNYSGITFPVILRDYPTYTLMPMTNDSFISWNGGFKAMESVI*
JGI24218J26658_10004343F007405GGAMTIRILPTHNFTYDGATLHVYHAHKGQGLPSHQHTYSHATICNAGSCLVSLEGRSYTINKDSQPLNLPAEEWHEIEALEDGTVFVNVFAEGKY*
JGI24218J26658_10004344F027746GGAMTYGIYPNSSPEFRMFQKSDGTMEMQVRYLNRPMNYIGKWMPVQTEKEHDNTHSSNS*
JGI24218J26658_10004349F002085GGAMNLITPVDNTNNIRYADFVRVTTPTATYRFSTAPYALTVPAVDSQPFDGLGVLVSIGNATRDIKSTANETTITLVGIDTALLGWVLGHDIKGSQIEMWHGFFDTENQLIDDGGSGGLYQFFNGFVSSFAISETWDENSKQFLGVITVAASSVQLILQNRNTGRYTNDNAWQFYNAGDTSMARVAFIQSLNYPFGKNAPAGN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.