Scaffold JGI24218J26658_1000347

Overview

Basic Information

• Taxon OID: 3300002092
• Scaffold ID: JGI24218J26658_1000347
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25500
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (78.72%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.152741
  • Long. (^o): 13.022518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F029972	Metagenome	186	Y
F036528	Metagenome / Metatranscriptome	169	Y
F037031	Metagenome / Metatranscriptome	168	Y
F052345	Metagenome	142	Y
F102399	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24218J26658_10003471	F036528	N/A	EAFEAKCELCAREQGTPGKYRRDVGYGIAVLREEVREDGKVTGYRDVTAEYSETVDGKVVTKKKPYVGIVSQGMRNFWNQIAVISEKYGSLRDREIEIMRQGAGTDTTYMAFALPEKEIENMDARYAKFVPDVEAFLNRIGSQEYYDAQLHGVVAEKKDAAPSTSETVASSDEEYADEEFVSIDEETTAERLRRKMASQQ*
JGI24218J26658_100034721	F029972	N/A	MGKFQQKFSQRQERELEEQWPMAKRTIGSGAKWEKADLQTQEYQNIEFMIECKSTQSSSFSITKTTWNTVKSHAQNKSWLSRPVLAVRLYGPTVEMTEWGERENTAETLPVELDLIVMDKDDFLELYEDYLRLKEKE*
JGI24218J26658_100034723	F102399	GGA	MNFLERTLAAYQNDEPITKYIEEALMKGDTFPEEYPVKVYNKERKFDNMYHPSSDVSAGELQLYYKFHPELRLQCQEERISPTLAMTFQVGSVFHSVIQNMLIHMGFTSLKDVEVKFKNEERMCAGAVDILRLVTPNGEEFLVDIKSTNQLPKEASYQYAMQLRTYQDNCPDAPERMALLFIQKSYPHKIKTIEVMKDQDELDKLYDKWDRVRVAIGKNDNSGLKHCCNGPTDEIFLGCPARKICSYWNE*
JGI24218J26658_100034726	F021233	N/A	MSTNKPLRKGLSGLTEPELGMNHNDKFNELHEFAVRAFSWEGKPDEKDMLDSIELIVEQFLHEYIHPAEVIIARFNTDSYLNDAEADRLFLNLQSAIVAIEEEVTRRYLKAQFSYYMLDDKYWDAYRKPVSGTTNDLTARARLETKDDRYFYFVQYAAWRIINDKVQSLKATQRHIQNQIYRRG*
JGI24218J26658_100034728	F052345	GAGG	MDRRTKEYKELVKMTPSTQELLSEEIDGELYLYKYSPQCKICNTSDDLKNIIDSLLLFPKPYKEVLQAIQPIQDKLGVEGDDRINYENIRNHQKRHLPFEKAIVRDIVERRAKEKNLSILDTSERLLTAEAFYEVIVAKGWEDLASGYNRPTLTQTMAAMEMLQSLEKQANEQYRPEELINQLDMILTAIREVLPVDMKEALFRKIEEYQSAEKKTKSAKALPGVEIDVEYIDEDLEEDF
JGI24218J26658_100034733	F037031	AGAAG	MTTNPNDLQGIRPEDVKQTPEQIAQVNAYLAQQKAEEEALGKEEPIELMESELMGVWQLLQELQYKYGNRKGSFANLTSLRSEADEKFHALGFQVVVDWVMPGIMTEPSPPTITIVGRVDGSVFNPEQNRYETGAGIADTYYEQKRKSLGMSNKLILPGM*