Scaffold JGI24028J26656_1002059

Overview

Basic Information

• Taxon OID: 3300002091
• Scaffold ID: JGI24028J26656_1002059
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3920
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F006016	Metagenome	383	Y
F041736	Metagenome / Metatranscriptome	159	Y
F065560	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_100205911	F005737	AGGAG	MFEIEHYKKPTDWAQIAMYTVSIIALIVIMLDFFYWRA*
JGI24028J26656_100205913	F006016	GGAG	MITETQATIQALATIESFTNDIDALFVLDQQAKTLADQVKAMKDAIANKYGEGEHKGELHSVTVKMVAVSGTVDYAKLCVSYGIQKDVLDTFRKEGRADIRVTPVK*
JGI24028J26656_10020594	F041736	AGGAG	MIKSQSMNFVMETMMDVAEEWEVSKWKSKDDMINPNAPMIVQIGDYGYEVQSCGGDGDIEGFVIMCKPEPVCVWAGMECIKLEGKA*
JGI24028J26656_10020596	F065560	GGAG	MTDSRYLDPEDEAFNEIEKQAKQRKESVQATVSLNPYRAQVIEEVAQAILKMEGFGQDTINSFAIYIRGLK*