Scaffold JGI24028J26656_1001633

Overview

Basic Information

• Taxon OID: 3300002091
• Scaffold ID: JGI24028J26656_1001633
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4756
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003539	Metagenome / Metatranscriptome	480	Y
F095139	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_10016338	F003539	N/A	MVKALAAEYNRKYSMIEQDDIAQELWVWFVAHPRKYKEWEALERKDMDKLIAKSLRNAALKFCEREKARKTGYDISDLYYYDVSVVEAFLPSIISETYEIPTKIKDLGNSVKGTEISDGNNWLSLRSDIASAYYRLSDAKQEILKLRFSVEQPDWATLAKDMDSTPDGARMKVQRAVNSLIKNLGGWRAFRDEDQQKESNDTAVEPADETEEQLTD*
JGI24028J26656_10016339	F095139	N/A	MLAWCDNGTTDGKFTEGIAYTLITRPIPIASAMRVQGNQIGRQRQNALEHWYDKTDFDWVLWVDSDIQLTDAALKLVWESADPIDRPVVTGTYFISKENERSLMAPYPAVFNWVEEDEFKIAYVHPLPANALIKVGTAGFGFVLMHRNAVAQMRKVHGATTYFNETGVGEEFVSEDINFFRLMAKAGVPLYTHTGALVKHMKR