Scaffold JGI24028J26656_1000874

Overview

Basic Information

• Taxon OID: 3300002091
• Scaffold ID: JGI24028J26656_1000874
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7857
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_10008741	F003521	AGGA	MDQIELKSLVLNIRGYFNRRTKAADAHKEADVNRKALAIDNGECASRLMKNEDFALLFNLYRFDLLSRLEECRTDPERIENAFNVAGVRDFIGFVEKTEYLGKVAKKLNT*
JGI24028J26656_100087410	F012670	AGGA	MTTTKDTEIIFGEIRPEGNHVSSDELKEKKRQYYQMKKAQKKAMNIVTGQQPPKEERPGVSPNIGGRPKSIVNRVTEYGALFNKLNDERAAKGLSPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLQALRKV*
JGI24028J26656_100087411	F001915	N/A	LVATIGQTSWTRRRKREEGADGSSALIERHGMEWTLASPLHDVDDIVEMADTIFGVEADGILTRDRNVFRKNVTIASTVQLFDKGREFLAVCREYDIARDTQKLLGYCWFDRGGYTTYANEEISNAKFHHVDLSLSTRMRVRLLNEMIDQHILWAHTWGIPVICSTSIRAEHNGFMRIHQKRGFQTNGSYAWVRTENAIKGLK*
JGI24028J26656_10008742	F004695	AGGA	MLDRQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQATQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMGPEESENEPSNQQEEMSEAIRANTVYKAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTIHECKSQFPYVDLEKLAAHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADKYSRVIMLTTAWIRKDVDGDGEEEIVEVCYSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFMDAEEIQRGVSAMFILDRKFDANKHVFQFQPMQGNLAYVESSMQRFEADKMAMIGMTSPSDVLNPEAMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYADDYNIQQLAAVCGKGKPFMDAISMSNYEFIDRKLINIDLALGFLSDENRLTRQQLIGAAQQQFTAMIASIDPSVPELFAKARRPFEDTLRVLGVKDVDAYLPTMEEAAKVMQAKAQQGPSALDKETQSKTDLNNAKVQESQTVSALNMKKAEDIDTDNMFEALAAKRGKLSAVEID*
JGI24028J26656_10008744	F006264	N/A	VGLIEEPSTLFRQKLSAQAEVCARKTLEWLQKDLQGDRTLPPKDVYYLASAADLLLTMRDLYGKK*
JGI24028J26656_10008745	F001059	AGGA	MATYDIEALKADLPSAKELAQFIYDKVGLSLDFVGKPKEDQYLVAKNALEGKKVPQDYMTELNPYIDRKETIPMDELKPDPARPADLPSPDSQIHFFGATNMPHPSDPQSDRKVQINFRKYENGLVTFQIMGPLEQQAQGSRLNKFGQNVPEKYTWLDPRTEETVMKRPDGTFTEKGRGLHSFCAGEKGGGIWSLIDRNPTEISQKNVVDPWA*
JGI24028J26656_10008747	F040590	GAG	MSAYGKVISGGKAMTAGLTKGINKKLDAFADSHKRSKMLAVAVRDTFNQNPLSDPHHNDVNGKKFTTPKLPSKV*