Scaffold JGI24028J26656

Basic Information
Taxon OID	3300002091 Open in IMG/M
Scaffold ID	JGI24028J26656_1000502 Open in IMG/M
Source Dataset Name	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002091 Open in IMG/M

Scaffold ID

JGI24028J26656_1000502 Open in IMG/M

Source Dataset Name

Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12062
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12062

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Brandenburg, Germany
Coordinates	Lat. (^o)	53.1666	Long. (^o)	13.0333	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Brandenburg, Germany

Coordinates

Lat. (^o)

53.1666

Long. (^o)

13.0333

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F007405	Metagenome	351	Y
F011148	Metagenome / Metatranscriptome	294	Y
F017785	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_10005022	F011148	GGA	MTVFNKNTLTQVSGFDNQIIAGELVYNQKTFWNLSLANNGTPLDLTGTTIDAQIIRRKLSNVKDTRYGLSFDISDYTPTPTPVTLSIVNLNEANGFFTLVIDETAWDLVANDPDLDIAYINGAGYSGRIKISFPASGSNPANDLIIFLLFIVRSDAIVNN*
JGI24028J26656_10005023	F007405	N/A	MKTSAPRHSFTYDGAQLNVYHADKGQGLPHHRHTYSHATMCNAGSCLISLEGRSYTINKDSQPLNLPANEWHEIEALEDGTVFVNVFAEGKY*
JGI24028J26656_10005028	F017785	GAGG	MSTTIIPIEGTNNIRYSDFVRIVTPSATYRFSTAPVKLTIPAVDSQPFDALGALVGIGKIQRDIKSTANQTTVTIVGLDTALLGAVLNLDFKGSQITMWKGFFDTNNQLITTGGSGGLYQYFYGFINSFNISEQWMEEVRMYVGAITLSAANIQMILQSRIAGRFTNDPSWQFFNAGDTSMNRVAVISTLTYPFGKT*
JGI24028J26656_10005029	F000934	AGTAG	MPNLTTILAVSESIMINDHRFVGQILSRNERIVTSEVLTVVPFQFTMKPMAYLLYSQNRALLANLRKYDRSLTQYLNFASTGWVNYIAYQGDMTSGQIATCQWQTSSTGTNLVLGNLPSISSTLYIVKAGDFCQMDSYAYIATTDVLRGSGTTVTIPVHRTILTALTSVQNAVIGQYGTTISMGGSTYAGVTFPVILQLYPTYNLVPMTNDSFIQWSGNFQAIEAVT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24028J26656_1000502

Overview

Ecosystem & Geography

Associated Families

Sequences