NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24028J26656_1000470

Scaffold JGI24028J26656_1000470


Overview

Basic Information
Taxon OID3300002091 Open in IMG/M
Scaffold IDJGI24028J26656_1000470 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12627
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.1666Long. (o)13.0333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007405Metagenome351Y
F021463Metagenome218Y
F027746Metagenome193Y
F075594Metagenome118N

Sequences

Protein IDFamilyRBSSequence
JGI24028J26656_10004706F075594GGAMSSTFTVSRNQIISLALRKLGVLELGDVPDAATVENASLALNLLIKQMATQGLKIWKVNELHIPLVNGQTTYSIGPAYYNASTDLDTAKPLKVIQAWLRQYTVSPPIDTPMQILSKQEYDTLGSKFSTGVANSVYYNVRQNNGDLYVYLTPNQNAAYQYQLYFVCQQPMDDVNAGGQVPDFPAEWMNTLVWNLADQLAIEYSVPANHRQEIAMRAKAYQDQLNDWDVEATSTFFQADLRMANVTFGKPN*
JGI24028J26656_10004707F021463AGGAMNAEALENRVVRLEIKTDNHEDDIKELRKSANDLSKAMASIEKNLAQIKYIAIGALAVVVAQSMGIDKAVKLLFGT*
JGI24028J26656_10004708F007405GGAMTQAVAPKHSFTYDGAQLNVFHANAGQGLPHHQHTYSHATMCNAGSCLVSLEGRSYTINKDSQPLNLPANEWHEIEALENGTVFVNVFAEGKY*
JGI24028J26656_10004709F027746GGAMTYGIYPNSTPEFRTLQKENGTMEMQVRYLNRPMNYVGKWMPVQTEKENDTSSCP*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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