Scaffold JGI24810J26611_10023

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24810J26611_10023

Scaffold JGI24810J26611_10023

Overview

Basic Information
Taxon OID	3300002089 Open in IMG/M
Scaffold ID	JGI24810J26611_10023 Open in IMG/M
Source Dataset Name	Soil microbial communities from Manhattan, Kansas, USA - Sample 100um emPCR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9029
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location
Location Name	Manhattan, Kansas, USA
Coordinates	Lat. (^o)	39.214	Long. (^o)	-96.5852	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082835	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24810J26611_100232	F082835	N/A	MKTVNTLFVVIILLGSCSSPKKTAPKRNLPTVTHADELKGGTSFSNPIVIMMQSEREVLDEEYKWLSINYPGYSLMRRTHKLRLSKHYDIVRIKTNQGRLRDIYFDSTHFWGKK*

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