Scaffold JGIcombinedJ21914_10002038

Overview

Basic Information

• Taxon OID: 3300002072
• Scaffold ID: JGIcombinedJ21914_10002038
• Source Dataset Name: Barrow Graham LP Ref core NGADG0011-211 (Barrow Graham LP Ref core NGADG0011-211,NGADG0004-312, ASSEMBLY_DATE=20131005)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8094
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow, Alaska, USA
• Coordinates
  • Lat. (^o): 71.290565
  • Long. (^o): -156.788622

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019814	Metagenome / Metatranscriptome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ21914_1000203813	F019814	N/A	PIPIAVNLSFGMNDILHKKVSPPFEGGVVGTIDYLIYTVFYFPTGVVDSLISSYLYWYEKPKPL*