Scaffold JGIcombinedJ21913_10020478

Overview

Basic Information

• Taxon OID: 3300002068
• Scaffold ID: JGIcombinedJ21913_10020478
• Source Dataset Name: Barrow Graham LP Ref core NGADG0004-212 (Barrow Graham LP Ref core NGADG0004-212,NGADG0011-311, ASSEMBLY_DATE=20131010)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3053
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska, USA
• Coordinates
  • Lat. (^o): 71.2905
  • Long. (^o): -156.788708

Associated Families

Family	Category	Number of Sequences	3D Structure?
F106171	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ21913_100204785	F106171	N/A	MADNNDGPENDITDPTSEEHGDVHRRFVELWNERTSGDAGAIALDSAWQPIANLLEGHASAETGVANPVSTKEGSDGATEGTNDAQPAEEERDVMPDFPGHSDEAPMSHPGAR*