Scaffold SMTZ23_10068868

Overview

Basic Information

• Taxon OID: 3300002053
• Scaffold ID: SMTZ23_10068868
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_SMTZ
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5799
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.6478111
  • Long. (^o): -77.1112083
  • Depth (m): .24 to .32

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010682	Metagenome	300	Y
F051095	Metagenome	144	Y
F077254	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
SMTZ23_100688682	F010682	GGAG	MVYTPQTNWKYDKNLYHPIQSGPQRTGDDRNLIDTYLTVSSGYVPPSGIQQTWFGVNDEGADFGRIPVGPPNISGYFTTDWRAVPPAVSGYWTNYENTQPHASGLLDSYVGFRAQGIYSTANASVQTAYGPEPGLRNFGTHTWYGEQIPDNQIYSPFQTPSSNDNTLDGGGITGGGVTHPRVASPSLTNPTNDTSGSRAAWVYHHPVYCQSFTETRYTGVPGQMGSPVRNSYRGKSLRYVPNYGSVYGVLGESVRNMVRTFSPGTKI*
SMTZ23_100688683	F051095	GAG	MTSHIERALTVFFEDPEASIACFSGSITESLTHPRGIKKVIPYLVKASLVGYMLATFVSPAIEDRFNLTKNEAIATSFIIGYAGIRILAAAERLAEKELERRIGKEKKDDIS*
SMTZ23_100688689	F077254	N/A	MDPYTKAAFGFAKAYQMNMRAADEQRRANQPSSNAFAEGVADGERDYTYSPNPQAPAAPNEQYTGMDSDNGTVLDDSNGNSLKRAKQKASKYLQAGD*