Scaffold MIS_10060621

Overview

Basic Information

• Taxon OID: 3300002027
• Scaffold ID: MIS_10060621
• Source Dataset Name: Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 1.5k-5k
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3107
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Source Dataset Sampling Location

• Location Name: Middle Island Sinkhole, Lake Huron Michigan, USA
• Coordinates
  • Lat. (^o): 45.19843
  • Long. (^o): -83.32721
  • Depth (m): 23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011397	Metagenome / Metatranscriptome	291	Y
F022996	Metagenome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
MIS_100606215	F011397	N/A	MQDFELLKRTYPVSEFDRNCDGYDYIVRNSTDEERLEWEINLNDLQRVIKAGEKYIYQVAKEGKQFKIMCLCFNNYAIIRKHIFKLDDD*
MIS_100606218	F022996	N/A	MEAIEKIDIAKMKTDIKAMVELQKFYKNQRKTVNLVGERKLEPSDAAYKHRENREDLRMMYAAYGQARGKEFNQIEKRYDLHNVHPLTYPYAKTRIERILTKYKILVPVETVV*