Scaffold GOS2246_10162346

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2246_10162346

Scaffold GOS2246_10162346

Overview

Basic Information
Taxon OID	3300001974 Open in IMG/M
Scaffold ID	GOS2246_10162346 Open in IMG/M
Source Dataset Name	Marine microbial communities from Upwelling, Fernandina Island, Equador - GS031
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1499
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Upwelling, Fernandina Island, Equador
Coordinates	Lat. (^o)	-0.3011111	Long. (^o)	-91.651665	Alt. (m)		Depth (m)	12
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060833	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2246_101623463	F060833	GGAGG	MPEEIIGTLTDFEVTETYVIKARTREEAYQMVADNDFKYGIQRHQVRIEPNY*

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