Scaffold GOS2233_1100362

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2233_1100362

Scaffold GOS2233_1100362

Overview

Basic Information
Taxon OID	3300001969 Open in IMG/M
Scaffold ID	GOS2233_1100362 Open in IMG/M
Source Dataset Name	Marine microbial communities from Yucatan Channel, Mexico - GS017
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1801
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Yucatan Channel, Mexico
Coordinates	Lat. (^o)	20.5225	Long. (^o)	-85.41361	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002883	Metagenome / Metatranscriptome	523	Y
F014748	Metagenome / Metatranscriptome	260	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2233_11003623	F014748	AGGAG	MNIGDRVQTLNTFVPITGEIVDMYKNRVTIADDDAETTDDLLSFHADDLEVI*
GOS2233_11003624	F002883	AGGA	MSTLHHEDLLLQIFDEVQEAFPYLDEEKQIEIANNRFQEICQ*

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