Scaffold GOS2236_1092733

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2236_1092733

Scaffold GOS2236_1092733

Overview

Basic Information
Taxon OID	3300001968 Open in IMG/M
Scaffold ID	GOS2236_1092733 Open in IMG/M
Source Dataset Name	Marine microbial communities from Lake Gatun, Panama - GS020
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2239
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Lake Gatun, Panama
Coordinates	Lat. (^o)	9.164444	Long. (^o)	-79.83611	Alt. (m)		Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013172	Metagenome / Metatranscriptome	273	Y
F020890	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2236_10927335	F020890	N/A	MDCFDDIQIEDLSSFDFVEELNDGLFDEVDDEKTFNAFLNSNWDFDYD*
GOS2236_10927336	F013172	GGA	MTETKHFWTTKLNDATARRLDKLVDEGVKIDTSTHQGRKQIGYNYLELVKE*

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