Scaffold GOS2242_1045872

Overview

Basic Information

• Taxon OID: 3300001967
• Scaffold ID: GOS2242_1045872
• Source Dataset Name: Marine microbial communities from Devil's Crown, Floreana Island, Equador - GS027
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2670
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Devil's Crown, Floreana Island, Equador
• Coordinates
  • Lat. (^o): -1.2161111
  • Long. (^o): -90.422775
  • Depth (m): 2.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F073646	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2242_10458722	F006793	N/A	MTNNRSTNEQIQERVNFAADELAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPILTQSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDDAYNSNLFKNFSEAKKKLKHGNLDALDGDVPEGEIPF*
GOS2242_10458725	F012584	N/A	MKLKPKTECFRPKMPENTFELNEDSLPTLGDSDPWGKIMVWRKDVGWTVIPLTDTVQYLAMKHTHWTYTPYFPYNKSVTEQ*
GOS2242_10458728	F073646	N/A	KEEKIMLQSEYLELAIELYDIYSAHDIHHKRWLAARELEKLKGGPGLIAKIKKKKGKFSELQPVFVDYVNTQNQYRSCNTPQQWSCKFDYWLQDEYEFTKEELNELCSDRGRQSRRETSKEVTI*