Scaffold GOS2243_1059127

Overview

Basic Information

• Taxon OID: 3300001965
• Scaffold ID: GOS2243_1059127
• Source Dataset Name: Marine microbial communities from Coastal Floreana, Equador - GS028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2871
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Coastal Floreana, Equador
• Coordinates
  • Lat. (^o): -1.2169445
  • Long. (^o): -90.319725
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017499	Metagenome / Metatranscriptome	240	Y
F035780	Metagenome / Metatranscriptome	171	Y
F096215	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2243_10591271	F035780	N/A	MAVPEEYELTVKESKEVWWATTKEYDLEIDGENISVRIAETPKSTEFFEYEENSGWNEADTDSGLMAIV
GOS2243_10591272	F096215	N/A	MADFNTGDKVTWTAEMVCVPHPEGKTDRNGEVLPVFRDKQMTGTIINSCYDNRYTVRPDGTTTPKGMDSYYDKMVKGSKLSKI*
GOS2243_10591275	F017499	N/A	MSRYNSRMHGVTEDNVYVDLNWGFDHVLGYWYDIIETRNGEEKIIEEWSSGMGGSRSKMLEFLIKYNLPEEHRSMVGLDMQF*