Scaffold GOS2243_1036530

Overview

Basic Information

• Taxon OID: 3300001965
• Scaffold ID: GOS2243_1036530
• Source Dataset Name: Marine microbial communities from Coastal Floreana, Equador - GS028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1838
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Coastal Floreana, Equador
• Coordinates
  • Lat. (^o): -1.2169445
  • Long. (^o): -90.319725
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061973	Metagenome	131	Y
F078925	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2243_10365303	F061973	AGG	MFDNQYFKKYLDDKNVDLKEHLEIEKLCTLDIDPKEFQHFADIHREEATVKWYHPRPFLNAQTNEQAINANWIGYNEHNTTESNWGLDPIHNSTLKGMVGGKNFKMLGIDPNKSLLRLLEYMPGHSLPLHCDGFEVSKNYMAMERLHVFLLQ*
GOS2243_10365305	F078925	AGGAG	MYKFETKTNEEGVIENVINHKPEGYNPSTGIYASSYIFQGDWEDELKALNFTRRGQAFKEVEKVDAMKGQDTQYLYNSFRSADGKDTTHDQLQDFWKEENPADYKDTNSK